SE3040767

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_904
  • Malus domestica
  • SE3040767
  • CACTA
  • MadC1
  • MDC021085.750:6033-6388
  • TTA
  • ACACTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       ------------  TT      GATAAATAAATTTGAAATTTGGATAAATGTCAGAATTTATAAATGATATGCACAAATTCTCTTGTTTTGATTCATAAACATAAAAATTTAGAATTTCTGCGTGGAAAAAAAACTTAGGATATGGGACCTCCAATTCCCAAGTATAAATTCATTG
  ACACTAT            GA  TGATGA                                                                                                                                                          
  |||||||            ||  ||||||                                                                                                                                                           
  TGTGATA            TT  TAAATT                                                                                                                                                          
AT       CAAACCTACTTC  --      CTAATGATGATTTAAACTTTTACTACATTTAACTTTACTGCTCTAAAATAAAAGATCTTAAATACTTAAAAGAACGAATCAATTGGATTTCCTTGTTACCTTTAAGCAATAAAAATTTGAGAGTTAATATCCTAATCCTTTACTGTGTATAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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