Plant MITE

SE3020769

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_906
Malus domestica
SE3020769
Mutator
MadM10
MDC001514.355:20186-20403
AACTCGATC
TCGATCGGAGGCAAATTGTCTGCCCTTCTTTTACCATGCCCTTCCCATCCCCTCCTATTTGTGCGGTCACGGTTAAGCCACGTCAACAT

Secondary structure and sequence

TSD TIR

5'

3'

AAC    -TC       A               T                            -     C                         AGCT    ATCTCTAT
   TCGA   GGAGGCA ATTGTCTGCCCTTCT TTACCATGCCCTTCCCATCCCCTCCTAT TTGTG GGTCACGGTTAAGCCACGTCAACAT    TATT        
   ||||   ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    ||||        A
   AGCT   CCTCCGT TAACAGACGGGAGGG AATGGTACGGGAAGGGTAGGGGAGGATG AACAC CCAGTGCCAATTCGGTGTAGTTGTA    ATAA        
 CT    CAA       C               T                            T     A                         AAAT    CTAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020769

AACTCGATCGGAGGCAAATTGTCTGCCCTTCTTTTACCATGCCCTTCCCATCCCCTCCTATTTGTGCGGTCACGGTTAAGCCACGTCAACATAGCTTATTATCTCTATAAAAAAATCAATATAAAATGTTGATGTGGCTTAACCGTGACCACACAATGTAGGAGGGGATGGGAAGGGCATGGTAATGGGAGGGCAGACAATCTGCCTCCAACTCGATC

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