Plant MITE

SE3020779

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_916
Malus domestica
SE3020779
Mutator
MadM10
MDC003325.324:4084-4320
CAATTGAAA
CAATTGAAAGGACAAGGGTTGTCTGCCCTCCCACTTCCGGTGCCCTCTCGTGCTCTCCTGTTTTGTGTGGTCACGGTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

         AAA                            C                         T                 CCAC                   T     AGAGATAAT
   CAATTG   GGACAAGGGTTGTCTGCCCTCCCACTTC GGTGCCCTCTCGTGCTCTCCTGTTT GTGTGGTCACGGTTAAG    GTCAATATTTTATATTATT TTTAT         
   ||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||| |||||          
   GTTAAC   CCTGTTCCTAACAGACGGGAGGGTGAAG CCACGGGAGGGCACGAGAGGACAAA CACACCAGTGCCAATTC    CAGTTGTAAAATATAATGA AAGTA         
AAA      ---                            T                         -                 AATA                   T     AAAACAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020779

CAATTGAAAGGACAAGGGTTGTCTGCCCTCCCACTTCCGGTGCCCTCTCGTGCTCTCCTGTTTTGTGTGGTCACGGTTAAGCCACGTCAATATTTTATATTATTTTTTATAGAGATAATAAGACAAAAATGAATAGTAATATAAAATGTTGACATAACTTAACCGTGACCACACAAACAGGAGAGCACGGGAGGGCACCTGAAGTGGGAGGGCAGACAATCCTTGTCCCAATTGAAA

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