Plant MITE

SE3020780

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_917
Malus domestica
SE3020780
Mutator
MadM8
MDC018848.214:47082-47257
TAATATTAA
TAATATTAAGKATAATGCTAGGGAGACCAAATTTTTTAAACCAAATGATGTGG

Secondary structure and sequence

TSD TIR

5'

3'

         A KA                   TT             GA     TTGTT      -  -G    -    --T      TTGAT
 TAATATTA G  TAATGCTAGGGAGACCAAA  TTTTAAACCAAAT  TGTGG     AATGAT TG  ACTA TTAC   TAAGCG     
 |||||||| |  |||||||||||||||||||  |||||||||||||  |||||     |||||| ||  |||| ||||   ||||||      
 ATTATAAT C  ATTACGATCCCTCTGGTTT  AAAATTTGGTTTA  ACGTT     TTACTA AC  TGGT AATG   ATTCGT     
A        - CC                   -T             -A     -TGGT      C  AG    T    TTT      GCAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020780

TAATATTAAGKATAATGCTAGGGAGACCAAATTTTTTAAACCAAATGATGTGGTTGTTAATGATTGGACTATTACTTAAGCGTTGATTAACGTGCTTATTTGTAATTGGTGACACATCATTTGGTTTGCAAATTTGGTTTAAAATTTTGGTCTCCCTAGCATTACCCTAATATTAA

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