Plant MITE

SE3020781

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_918
Malus domestica
SE3020781
Mutator
MadM47
MDC021631.164:9797-9964
TTTTATGAT
TTATGA

Secondary structure and sequence

TSD TIR

5'

3'

TT      TGAGT   -     ACA    A         T               G                  A        CAAC
  TTATGA     AAA GCTAC   CTTA CCACCTAGT GTACCATCATTTGTA CATCTCTCTAATAGAGAT GGGCCTAC    
  ||||||     ||| |||||   |||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||     
  AGTATT     TTT CGATG   GAAT GGTGGATCA CATGGTAGTAAATAT GTGGAGAGATTATCTCTA CCTGGGTG    
 T      TTGTT   A     --A    -         -               G                  C        TACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020781

TTTTATGATGAGTAAAGCTACACACTTAACCACCTAGTTGTACCATCATTTGTAGCATCTCTCTAATAGAGATAGGGCCTACCAACGCATGTGGGTCCCATCTCTATTAGAGAGGTGGTATAAATGATGGTACACTAGGTGGTAAGAGTAGCATTTTTGTTTTATGAT

Copy Cancel