Plant MITE

SE3050783

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_920
Malus domestica
SE3050783
PIF/harbinger
MadP9
MDC021694.103:1117-1465
TAA
AGGCCTGGTTTCGTACTGAGGTGATTCTGAAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TA   CC      C   C  AG   A  C        -------    GTAT   AAAAAGCTAGGAGCTGTTTTTGTGTTTGGTAAACATTCAGCTTCAGCTTTTTTTTCACAGTTTTGGGTGAAAAAGAGCCAAAAACAAAAAGCTGCAAAACTCAGCTTTGAAAAACCGGTTTTTTT
  AGG  TGGTTT GTA TG  GTG TT TGAAAAAA       GCTG    GAA                                                                                                                             
  |||  |||||| ||| ||  ||| || ||||||||       ||||    |||                                                                                                                             T
  TCC  ACCAAA CAT AC  CAC GA ACTTTTTT       AGAC    AAC                                                                                                                             
AA   CA      C   A  GA   -  A        TCAACAA    ----   ACGACACTCTTATTCATCGACACTTTATTTYGTTGTCTCACAAACCATTTGAAAAAACATTTTCACGAAAACYTTTTTTTTCGTCATAATATCACAAACCATTTGAAAATATATTTTGTCTACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050783

TAAGGCCTGGTTTCGTACTGAGGTGATTCTGAAAAAAGCTGGTATGAAAAAAAGCTAGGAGCTGTTTTTGTGTTTGGTAAACATTCAGCTTCAGCTTTTTTTTCACAGTTTTGGGTGAAAAAGAGCCAAAAACAAAAAGCTGCAAAACTCAGCTTTGAAAAACCGGTTTTTTTTCACATCTGTTTTATATAAAAGTTTACCAAACACTATAATACTGCTTTTTTTTYCAAAAGCACTTTTACAAAAAAGTTTACCAAACACTCTGTTGYTTTATTTCACAGCTACTTATTCTCACAGCACAACAGAAACAACTTTTTTTCAAAGCACAGCAATACCAAACCAACCCTAA

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