Plant MITE

SE3020784

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_921
Malus domestica
SE3020784
Mutator
MadM15
MDC008817.366:5623-5838
CAAACGATA
GGACCAGGATCCTCTCCTGAGCAGATGGAGAGGATCCTCCTGACCAGACCCATCGGGCCGTTCATTTTTTATCCAACGGCTA

Secondary structure and sequence

TSD TIR

5'

3'

CAAACGATA   C                                        C  A C                                --CAAACAGG    CCTC
         GGA CAGGATCCTCTCCTGAGCAGATGGAGAGGATCCTCCTGAC AG C CATCGGGCCGTTCATTTTTTATCCAACGGCTA          GGCT    
         ||| |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||          ||||     
         CCT GTCCTAGGAGAGGACTCGTCTACCTCTCCTAGGAGGACTG TC G GTAGCCTGGCAAGTAAAAAATAGGTTGCCGAT          TTGA    
ATAGCAAAC   A                                        A  C A                                ATTAATAATA    AAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020784

CAAACGATAGGACCAGGATCCTCTCCTGAGCAGATGGAGAGGATCCTCCTGACCAGACCCATCGGGCCGTTCATTTTTTATCCAACGGCTACAAACAGGGGCTCCTCTAAAAGTTATAATAATTATAGCCGTTGGATAAAAAATGAACGGTCCGATGAGCCTAGTCAGGAGGATCCTCTCCATCTGCTCAGGAGAGGATCCTGATCCCAAACGATA

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