Plant MITE

SE3020786

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_923
Malus domestica
SE3020786
Mutator
MadM10
MDC007111.1287:8930-9131
AAAAAGAAT
TGGAATAGGATT

Secondary structure and sequence

TSD TIR

5'

3'

AAAAAGAA    A       WTRTC   R         CRTTTWKATTRTC      R     ----   ACMGTCATGGTTAAACCACGTCAACATTTTATATGAATT
        TGGA TAGGATT     CCC TTTTTTTCC             TCTCTT CTATT    TGA                                       
        |||| |||||||     ||| |||||||||             |||||| |||||    |||                                        
        ACCT ATCTTAA     GGG GGAGAAAGG             AGGGAA GGTAG    GTA                                       
TAAGAAAA    G       AAGAA   A         -----------TA      -     GAGA   GAGTGTAAGAGATAAAACAGAAAGAGAAAGATATTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020786

AAAAAGAATGGAATAGGATTWTRTCCCCRTTTTTTTCCCRTTTWKATTRTCTCTCTTRCTATTTGAACMGTCATGGTTAAACCACGTCAACATTTTATATGAATTTTTTTTATAGAAAGAGAAAGACAAAATAGAGAATGTGAGATGAGAGGATGGAAGGGAATGGAAAGAGGAGGGAAGAAAATTCTAGTCCAAAAAGAAT

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