SE3050792

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_929
  • Malus domestica
  • SE3050792
  • PIF/harbinger
  • MadP4
  • MDC012453.477:4792-5227
  • TAA
  • GGAGGGTGTATTCAATTGAGAATTTGAGATATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TAA  A             T A  A      AT     A     TTTATAAATCCATGGATTTTTATGGAGTTTAATTGATTTGTAGAGATTCCATGTAAAATTTTGATTCAATTCCCTCGAAATCTCTTGGGGAGAGGTGGAGATTTGTGGATGCTCAAAATACACTACGAAATCTCTCCAATTCCCTCTAATTCCTCAACTTTCTCAAATTCTTTA
   GG GGGTGTATTCAAT G GA TTTGAG  ATTTT ATGGA                                                                                                                                                                              
   || ||||||||||||| | || ||||||  ||||| |||||                                                                                                                                                                              A
   CC CCCACATAAGTTA C CT AAACTC  TAAAA TTAAG                                                                                                                                                                              
ATC  C             T C  A      CC     -     AAAATTACTTAGATCCCTATAGGTTAGTCCTTAAATTCACTAAGAGACTTTAAGTTACACATAAGTTAGTCCTAAAATTCTATCAAATACTTTTAGGAATCTTTAGACCCACATAAGTTAATCCTAAAATTTCTTCAAATAGTGTAATGTCCACATAAATTAATCTTAAACTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End