SE3020798

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_935
  • Malus domestica
  • SE3020798
  • Mutator
  • MadM43
  • MDC012883.429:943-1170
  • TTCTTAAAT
  • GGAGATGGATTGTCTGCCCTCCTTTCTCCATACCCTCCTCATACCCTCCTGTTTTGTGCGATTACGGTTAAGCCACGTCAACATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTTAAAT     T                   C       C  C     A  C              A                 C       GCTTTT       TT      AT
         GGAGA GGATTGTCTGCCCTCCTTT TCCATAC CT CTCAT CC TCCTGTTTTGTGCG TTACGGTTAAGCCACGT AACATTT      TGTATTA  ATTTTT  
         ||||| ||||||||||||||||||| ||||||| || ||||| || |||||||||||||| ||||||||||||||||| |||||||      |||||||  ||||||   
         CCTCT CCTAACAGACGGGAGGAGA AGGTATG GA GGGTA GG AGGACAAAACACGC AGTGCCAATTCGGTGCA TTGTAAA      ATATAAT  TAAAAA  
TAAATTCTT     T                   A       A  A     C  A              C                 A       ------       --      TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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