Plant MITE

SE3020813

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_950
Malus domestica
SE3020813
Mutator
MadM4
MDC011784.299:1918-2106
TAACAATAT
GAGTAATGCTAGGAAGATTAAATTTGTAGACTAAATTTGCAAACTAAATGATGTG

Secondary structure and sequence

TSD TIR

5'

3'

TAACAATAT        C    AAG                      - C            G  TCACCAAT   -A     --------------GC     TA
         GAGTAATG TAGG   ATTAAATTTGTAGACTAAATTT G AAACTAAATGAT TG        AAG  AATGA                ACGTT  
         |||||||| ||||   |||||||||||||||||||||| | |||||||||||| ||        |||  |||||                |||||   
         CTCATTAC ATCC   TGATTTAAACATCTGATTTAAA C TTTGATTTACTG AC        TTC  TTACT                TGCAA  
TATAACAAT        A    CTA                      A A            G  -------C   AA     AACCTAATAATAAATT     CT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020813

TAACAATATGAGTAATGCTAGGAAGATTAAATTTGTAGACTAAATTTGCAAACTAAATGATGTGTCACCAATAAGAAATGAGCACGTTTATCAACGTTTAAATAATAATCCAATCATTAACTTCCAGGTCATTTAGTTTACAAAATTTAGTCTACAAATTTAGTATCCCTAACATTACTCTAACAATAT

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