Plant MITE

SE3020817

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_954
Malus domestica
SE3020817
Mutator
MadM15
MDC024062.23:3811-4026
GTAAAAGAC
ACGGGAAGAGATCCCCTCCGGATCTCTCCCACAAAAGCCCACCAATCAATTAATCCAGACCCTTGAAATTTGATCCAACGGCTA

Secondary structure and sequence

TSD TIR

5'

3'

GTAAAAG             CC                 A   G  C           A    A    C     A       C        CAAAC    GGCTCCTTAAA
       ACGGGAAGAGATC  CTCCGGATCTCTCCCAC AAA CC ACCAATCAATT ATCC GACC TTGAA TTTGATC AACGGCTA     AGGA           
       |||||||||||||  ||||||||||||||||| ||| || ||||||||||| |||| |||| ||||| ||||||| ||||||||     ||||            
       TGCCCTTCTCTAG  GAGGCTTAGAGAGGGTG TTT GG TGGTTAGTTAA TAGG CTGG AACTT AAACTAG TTGCCGAT     TTTA           
CAGAAAA             -A                 G   A  T           C    C    A     A       T        -----    ATAATATTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020817

GTAAAAGACGGGAAGAGATCCCCTCCGGATCTCTCCCACAAAAGCCCACCAATCAATTAATCCAGACCCTTGAAATTTGATCCAACGGCTACAAACAGGAGGCTCCTTAAAAAGTTATAATAATTTTAGCCGTTTGATCAAAATTCAAAGGTCCGGATCAATTGATTGGTTGGATTTGGTGGGAGAGATTCGGAGAGATCTCTTCCCGTAAAAGAC

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