SE3020821

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_958
  • Malus domestica
  • SE3020821
  • Mutator
  • MadM15
  • MDC002740.325:12895-13111
  • TATTTTATG
  • ATGGGAAAGGGATCCTCTCCGGATCCTTTCCTCCTAATCCATCAAATCAGGGAATCCGTATCATTGAAAATTGATCTAACGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTT        GG                             CAT             C   ATC       A      T   G   --   --  TATTATAACTT
      ATGGGAAA  GATCCTCTCCGGATCCTTTCCTCCTAATC   CAAATCAGGGAAT CGT   ATTGAAA TTGATC AAC GCT  GAA  GT           
      ||||||||  |||||||||||||||||||||||||||||   ||||||||||||| |||   ||||||| |||||| ||| |||  |||  ||           T
      TATCCTTT  CTAGGAGAGGCCTAGGGAAGGAGGATTAG   GTTTAGTTCTTTA GCA   TAACTTT AACTAG TTG CGA  TTT  CC           
GTATTT        AR                             ATC             A   CGA       A      T   G   TG   GT  CCGGGTGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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