SE3020823

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_960
  • Malus domestica
  • SE3020823
  • Mutator
  • MadM41
  • MDC019092.244:27373-27588
  • GTAATCTTC
  • CGGATTTGGATCTTCTCATGAGCCCAAGGAGAGGATCCTCCTGACCGAGCATTTTGAGTCGTTGGATTTTTATTCAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAATCTT                 A                  C            C      A  C                  GGRTACAAACA    ATATCTTTAAAG
        CGGATTTGGATCTTCTC TGAGCCCAAGGAGAGGAT CTCCTGACCGAG ATTTTG GT GTTGGATTTTTATTCAAC           GAGG            
        ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || ||||||||||||||||||           ||||            T
        GCCTAAACCTAGGAGAG ATTCGGGTTCCTCTCCTA GAGGACTGGTTT TAAGAC CG TAATCTAAAAGTAGGTTG           TTAA            
CTTCTAAT                 G                  A            A      C  A                  -----------    TATTAATAATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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