Plant MITE

SE3020824

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_961
Malus domestica
SE3020824
Mutator
MadM11
MDC012729.141:32161-32324
TAGTTTAGG
TAGGGGTGTGCTATCCACACACTTCTTTTTACTTCTTACACATCATTT

Secondary structure and sequence

TSD TIR

5'

3'

  TAGTT          C           TTC           TA      A   GTTAA   ATAT     -    TTCTTCA
       TAGGGGTGTG TATCCACACAC   TTTTTACTTCT  CACATC TTT     TTT    CCGTT GATC       
       |||||||||| |||||||||||   |||||||||||  |||||| |||     |||    ||||| ||||       A
       ATCCCTACAC ATAGGTGTGTG   AAAAATGAAGA  GTGTAG AAA     AAA    GGTAG CTAG       
ATTTGAT          T           TAA           AG      -   AATCA   -GCC     T    CCTTCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020824

TAGTTTAGGGGTGTGCTATCCACACACTTCTTTTTACTTCTTACACATCATTTGTTAATTTATATCCGTTGATCTTCTTCAATTCTTCCGATCTGATGGCCGAAAACTAAAAAGATGTGGAAGAAGTAAAAAAATGTGTGTGGATATCACATCCCTATAGTTTA

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