Plant MITE

SE3020825

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_962
Malus domestica
SE3020825
Mutator
MadM128
MDC013748.455:1836-2060
TATATACAA
A

Secondary structure and sequence

TSD TIR

5'

3'

        TATATACA    ATATAATCCTCTTCAGATTCTCTTTGTGGGAGTTCAGATGATCAATCAATCGTGTTCGTTTATTYTACATCGTGCGGTTAGAAATCATTTTGAATC
                AGGA                                                                                                
                ||||                                                                                                T
                CTAA                                                                                                
AACATATATCCTGCTC    GAAAAATACCCTAGGCCTCTAGTTAGTTAACATAAYCAAGTAGCATATAGRACACTAGTCAAAAACAATTTATGATAAATATAAGTTAAAATATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020825

TATATACAAGGAATATAATCCTCTTCAGATTCTCTTTGTGGGAGTTCAGATGATCAATCAATCGTGTTCGTTTATTYTACATCGTGCGGTTAGAAATCATTTTGAATCTTTTATAAAATTGAATATAAATAGTATTTAACAAAAACTGATCACARGATATACGATGAACYAATACAATTGATTGATCTCCGGATCCCATAAAAAGAATCCTCGTCCTATATACAA

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