Plant MITE

SE3020828

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_965
Malus domestica
SE3020828
Mutator
MadM11
MDC004794.336:9094-9260
TATATTAAA
AGGGGTGTGCTATCCACACACCCCAAATTACTTCTCACACACCC

Secondary structure and sequence

TSD TIR

5'

3'

TATATTAA    G    C               AA                 CCTTG       C  T     -    TTCTTTA
        AGGG TGTG TATCCACACACCCCA  TTACTTCTCACACACCC     TTAATTT TG CCGTT GATC       
        |||| |||| |||||||||||||||  |||||||||||||||||     ||||||| || ||||| ||||       A
        TCCC ACAC ATAGGTGTGTGGGGT  AATGAAGAGTGTGTGGG     AATTAAA GC GGCAG CTAG       
AAATTATA    A    T               AA                 ---AA       A  T     T    CTTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020828

TATATTAAAGGGGTGTGCTATCCACACACCCCAAATTACTTCTCACACACCCCCTTGTTAATTTCTGTCCGTTGATCTTCTTTAATTCATTCGATCTGACGGTCGAAAATTAAAAGGGTGTGTGAGAAGTAAAATGGGGTGTGTGGATATCACAACCCTATATTAAA

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