Plant MITE

SE3020829

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_966
Malus domestica
SE3020829
Mutator
MadM15
MDC003520.324:12464-12683
ATATTCACA
A

Secondary structure and sequence

TSD TIR

5'

3'

ATATTCACAGGA         TCTCYGGATCCTTTACTCYTAATCCATCAAATCAAAGAATTCGTACCGTTGAAATTTGATYCAATTGGTACAAACAGGGGTCCACTTTAAAA
            AAGGGATCC                                                                                            
            |||||||||                                                                                            G
            ACTTATACC                                                                                            
       ACAAC         TTTACCTAGTAGAGGTATAGGTAAGGAGGATTAGGTGGTTTARTCCTCTAGGTACAGGAACTTTAAACTAGATTGTCGACTTCAATAATATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020829

ATATTCACAGGAAAGGGATCCTCTCYGGATCCTTTACTCYTAATCCATCAAATCAAAGAATTCGTACCGTTGAAATTTGATYCAATTGGTACAAACAGGGGTCCACTTTAAAAGTTATAATAACTTCAGCTGTTAGATCAAATTTCAAGGACATGGATCTCCTRATTTGGTGGATTAGGAGGAATGGATATGGAGATGATCCATTTCCATATTCACAACA

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