SE3020830

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_967
  • Malus domestica
  • SE3020830
  • Mutator
  • MadM129
  • MDC013062.147:4563-4730
  • AATAAAAAG
  • GGATARTGCTATTCACACACCCATTTTTACCTCCCATACCCTTGTTAATTTTTCGCCATTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAAAAA  A  R                        ---------   CC        G         C  --------------C     CCT
        GG TA TGCTATTCACACACCCATTTTTAC         CTC  ATACCCTT TTAATTTTT GC               ATTGA   
        || || ||||||||||||||||||||||||         |||  |||||||| ||||||||| ||               |||||    
        CC AT ACGATAGGTGTGTGGGTAAAAATG         GAG  TGTGGGAG AGTTAAAAA TG               TAACT   
AAAAATAA  C  C                        AARAGTTAA   TA        -         C  ACATACTAACTTACT     TCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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