SE3020835

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_972
  • Malus domestica
  • SE3020835
  • Mutator
  • MadM130
  • MDC010034.218:443-659
  • AGCATGATT
  • CATGATTGGAACTGGATCCTCTCCTGAGCTCARGATGGGGATCTTCCCGATAAGCYCATCCAGATYGTTAAAATTTGATCAAACAGTT

Secondary structure and sequence

TSD    TIR
5'



3'
 AG    A                  C    C   R    G    C   CC  TA   Y     A   Y   A          A   A   CYAAACAA    CYCCTCTAA
   CATG TTGGAACTGGATCCTCTC TGAG TCA GATG GGAT TTC  GA  AGC CATCC GAT GTT AAATTTGATC AAC GTT        GGAG         
   |||| |||||||||||||||||| |||| ||| |||| |||| |||  ||  ||| ||||| ||| ||| |||||||||| ||| |||        ||||         A
   GTAC GACCTTGACCTAGGAGAG ACTC AGT CTAC CTTA GAG  CT  TCG GTAGG TTA CAA TTTGAACTAG TTG CGA        TTAA         
TTA    -                  T    A   C    Y    A   TA  CG   G     A   G   G          A   C   ------CG    TAATATTGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End