Plant MITE

SE3020840

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_977
Malus domestica
SE3020840
Mutator
MadM122
MDC012450.288:11842-12114
CTTTTATTC
GGATTTAGATTCTCTT

Secondary structure and sequence

TSD TIR

5'

3'

CTTTTATTC                TGGATTCTCTT            -CTA             C             A             AA     CM      GAATG   ----           AA         AGC
         GGATTTAGATTCTCTT           TGGATCCCCTCA    GGATCTCGGGGAT AATGCATGGTAAC GTTCATCAAAGAT  TGCGG  ATAATT     TTT    TTTATATTTTT  AAGTAAAGC   
         ||||||||||||||||           ||||||||||||    ||||||||||||| ||||||||||||| |||||||||||||  |||||  ||||||     |||    |||||||||||  |||||||||    
         CCTAAATCTAGGAGAG           GCCTAGGGGAGT    CCTAGAGTCCCTA TTACGTACCATTG CAAGTAGTTTCTA  ACGCC  TGTTAA     AAA    AAATATAAAAA  TTCATTTTG   
CTTATTTTC                -----------            AACC             A             A             GC     AG      AAAAA   TTCA           -G         CTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020840

CTTTTATTCGGATTTAGATTCTCTTTGGATTCTCTTTGGATCCCCTCACTAGGATCTCGGGGATCAATGCATGGTAACAGTTCATCAAAGATAATGCGGCMATAATTGAATGTTTTTTATATTTTTAAAAGTAAAGCAGCCTCGTTTTACTTGAAAAATATAAAACTTAAAAAAAAAATTGTGACCGCACGATCTTTGATGAACAGTTACCATGCATTAATCCCTGAGATCCCCAATGAGGGGATCCGGAGAGGATCTAAATCCCTTTTATTC

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