Plant MITE

SE3020841

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_978
Malus domestica
SE3020841
Mutator
MadM15
MDC002440.230:2518-2734
ATTGTTAAA
TTGTTAAAGGAAAGGGATCCTCTCCTGATTCCTTCTACCTAATTCTCCTCATCAAACAATCTGGGTCCTTAAAATTTGATCCAACGGCTAAAG

Secondary structure and sequence

TSD TIR

5'

3'

A   T   A                 T                          C   C         C   A                      --TTATTATA    T
 TTG TAA GGAAAGGGATCCTCTCC GATTCCTTCTACCTAATTCTCCTCAT AAA AATCTGGGT CTT AAATTTGATCCAACGGCTAAAG          ACTT 
 ||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||          |||| T
 AAT GTT CCTTTCCCTAGGAGAGG TTAAGGAAGGTGGATTAGGAGGAGTA TTT TTAGGTCCG GAA TTTAAACTAGGTTGCCGATTTT          TGAG 
A   T   A                 C                          T   T         A   C                      TGTCCCCGGG    A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020841

ATTGTTAAAGGAAAGGGATCCTCTCCTGATTCCTTCTACCTAATTCTCCTCATCAAACAATCTGGGTCCTTAAAATTTGATCCAACGGCTAAAGTTATTATAACTTTTAGAGTGGGCCCCTGTTTTTAGCCGTTGGATCAAATTTCAAGAGCCTGGATTTTTTTATGAGGAGGATTAGGTGGAAGGAATTCGGAGAGGATCCCTTTCCATTGTTAAA

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