Plant MITE

SE3020842

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_979
Malus domestica
SE3020842
Mutator
MadM11
MDC000512.417:25095-25258
TAAAAAATG
GGGGTGTGATATCCACACACCCCATTTTACTTCTCACACACCTTTTTAATTTTCGACCGTCGGATC

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAAAT        A          C    TT          C         --       C A    CG    GGATGAA
        GGGGTGTG TATCCACACA CCCA  TTACTTCTCA ACACCTTTT  TAATTTT G CCGT  GATC       
        |||||||| |||||||||| ||||  |||||||||| |||||||||  ||||||| | ||||  ||||       T
        CCCCACAC ATAGGTGTGT GGGT  AATGAAGGGT TGTGGGAAA  ATTAAAG C GGCA  CTAG       
TAAAAAAT        G          A    TT          A         CA       A A    -A    AAAAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020842

TAAAAAATGGGGTGTGATATCCACACACCCCATTTTACTTCTCACACACCTTTTTAATTTTCGACCGTCGGATCGGATGAATTGAAAAAGATCAACGGACAGAAATTAACAAAGGGTGTATGGGAAGTAATTTGGGATGTGTGGATAGCACACCCCTAAAAAAT

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