Plant MITE

SE3020844

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_981
Malus domestica
SE3020844
Mutator
MadM90
MDC001089.485:586-799
ACTTCCAAT
TGGAATTGGATCCTCTCCAAGGCAAAGCCTTGGGATCTT

Secondary structure and sequence

TSD TIR

5'

3'

ACTTCCAA                C A                    CCTTA    A     A     ---           C     C     ACAAGAA    CTC
        TGGAATTGGATCCTCT C AGGCAAAGCCTTGGGATCTT     TCTA TAACA GGGTC   AGATTTTGATC AACGG TACAA       GACT   
        |||||||||||||||| | ||||||||||||||||||||     |||| ||||| |||||   ||||||||||| ||||| |||||       ||||   C
        ACCTTAACCTAGGAGA G TCCGTTTCGGAGCCCTAGGA     GGAT ATTGT TCCAG   TCTAAAACTAG TTGCT ATGTT       TTGA   
TAACCTTC                A C                    CAACC    G     G     CAA           A     A     AATAATA    AAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020844

ACTTCCAATGGAATTGGATCCTCTCCAAGGCAAAGCCTTGGGATCTTCCTTATCTAATAACAAGGGTCAGATTTTGATCCAACGGCTACAAACAAGAAGACTCTCCTAAAGTTATAATAATTGTAATCGTTAGATCAAAATCTAACGACCTGTGTTAGTAGGCCAACAGGATCCCGAGGCTTTGCCTCGAAGAGGATCCAATTCCACTTCCAAT

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