SE3020849

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_986
  • Malus domestica
  • SE3020849
  • Mutator
  • MadM107
  • MDC001088.175:22441-22640
  • AATTAATAT
  • ATTAATATGGACTAGGATTCTCTCGCCTCATTTTTTCATCCCCTTCCATCCTCTCCTCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
 A      A    C             C   A     TCA         -A   T  C     ACATTCTCTTATTTT  CTTTCTCTTGCTATAAAAAATTAATATAAGA
  ATTAAT TGGA TAGGATTCTCTCG CTC TTTTT   TCCCCTTCC  TCC CT CTCTC               GT                               
  |||||| |||| ||||||||||||| ||| |||||   |||||||||  ||| || |||||               ||                               T
  TAATTA ACCT ATCCTAAGAGAGC GAG AAAAA   AGGGGAGGG  AGG GA GGGAG               CA                               
TA      -    C             A   -     ---         MA   -  Y     ---------------  TAAACTTGCCAYTGCTAATTCAGTGCAGTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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