SE3020850

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_987
  • Malus domestica
  • SE3020850
  • Mutator
  • MadM27
  • MDC016430.246:1638-1854
  • GAACTTGAT
  • GGATTTGGATCCTCTCATGAGCTTAGGAGGCTGAGCATTCTAAGCAAATCATACGAATCGTTGGATTTTGATCCAACAGCTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GAACTTGAT                A                   A   -TA             AA                C   A       ACAGACAACC   CT
         GGATTTGGATCCTCTC TGAGCTTAGGAGGCTGAGC TTC   AGCAAATCATACG  TCGTTGGATTTTGATC AAC GCTACAA          ACT  
         |||||||||||||||| ||||||||||||||||||| |||   |||||||||||||  |||||||||||||||| ||| |||||||          |||  A
         CCTAAACCTAGGAGAG ATTCGAATCTTCCGATTCG AAG   TCGTTTAGTGTGC  GGCAACTTAAAACTAG TTG TGATGTT          TGA  
TAGTTCAAG                G                   -   TGC             CC                A   A       --AATAATAT   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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