SE3020852

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_989
  • Malus domestica
  • SE3020852
  • Mutator
  • MadM43
  • MDC011528.107:19664-19890
  • TTCTTCAAG
  • AGGGACAAGGATTGTCTGCCCTCCTTGTTTTCGTGCCCTCCTATTTTGTGTGGTCATGGTTAAGCCACGTCAACTTTTATATTATTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTTCA                    C  C          ----------            T                         A -            T   TWTAAAGATAA
       AGGGACAAGGATTGTCTGCC TC TTGTTTTCGT          GCCCTCCTATTT GTGTGGTCATGGTTAAGCCACGTCA C TTTTATATTATT TTT           
       |||||||||||||||||||| || ||||||||||          |||||||||||| ||||||||||||||||||||||||| | |||||||||||| |||           T
       TTCCTGTTCCTAACAGACGG AG AACAAGGGCA          CGGGAGGATAAA CATACTAGTGCCAATTCGGTGCAGT G AAAATATAATGA AAG           
GAACTTC                    A  A          CAGGAAGGTA            -                         G T            T   TAAAAACAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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