Plant MITE

SE3020860

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_997
Malus domestica
SE3020860
Mutator
MadM41
MDC015544.205:1204-1419
TTGGAAGTG
GGGACCAGGATCCTCTCCTGAGCTAAGGATGAMGATCCTCCTCATCAAGGGGTGTGGGCCGTTGGATGAAAATCCAACGGCTACAAACAGGGGG

Secondary structure and sequence

TSD TIR

5'

3'

TTGGAAGT                           G    M                                                     --------  AG    TC
        GGGACCAGGATCCTCTCCTGAGCTAAG ATGA GATCCTCCTCATCAAGGGGTGTGGGCCGTTGGATGAAAATCCAACGGCTACAA        AC  GGGG  
        ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||  ||||   
        TCCTGGTCCTAGGAGAGGACTCGATTC TACT CTAGGAGGAGTAGTTCCCCACACCCGGCAATCTACTTTTAGGTTGCCGATGTT        TG  CTTT  
GTGAAGGT                           G    C                                                     AATAATAT  AA    TC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020860

TTGGAAGTGGGACCAGGATCCTCTCCTGAGCTAAGGATGAMGATCCTCCTCATCAAGGGGTGTGGGCCGTTGGATGAAAATCCAACGGCTACAAACAGGGGGTCCTTTTCAAGTTATAATAATTGTAGCCGTTGGATTTTCATCTAACGGCCCACACCCCTTGATGAGGAGGATCCTCATGCTTAGCTCAGGAGAGGATCCTGGTCCTTGGAAGTG

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