Plant MITE

SE3020866

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1003
Malus domestica
SE3020866
Mutator
MadM20
MDC010662.110:25015-25230
TACCTTAAG
CTTAAGGGACCTGGATCCTCTCCGAGGCAAACCCTCGGTTCCTACTGAGCGACAAACACAGACCGTTGGATTTCGATCTAACCGCTATAA

Secondary structure and sequence

TSD TIR

5'

3'

TAC       ---  C                            -T    AC             CA A C                  C       ----------ACAT    T
   CTTAAGG   GA CTGGATCCTCTCCGAGGCAAACCCTCGG  TCCT  TGAGCGACAAACA  G C GTTGGATTTCGATCTAAC GCTATAA              GGAG 
   |||||||   || ||||||||||||||||||||||||||||  ||||  |||||||||||||  | | |||||||||||||||||| |||||||              |||| C
   GAATTCC   CT GACCTAGGAGAGGCTCCGTTTGGGAGCC  AGGA  ACTCGCTGTTTGT  C G CAACTTAAAGCTAGGTTG CGATGTT              TCTC 
          ATC  T                            CT    CA             TC C A                  T       AATAATATTAAAAT    C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020866

TACCTTAAGGGACCTGGATCCTCTCCGAGGCAAACCCTCGGTTCCTACTGAGCGACAAACACAGACCGTTGGATTTCGATCTAACCGCTATAAACATGGAGTCCCTCTTAAAATTATAATAATTGTAGCTGTTGGATCGAAATTCAACAGCCCTTGTTTGTCGCTCAACAGGATCCCGAGGGTTTGCCTCGGAGAGGATCCAGTTCCTACCTTAAG

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