SE3020870

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1007
  • Malus domestica
  • SE3020870
  • Mutator
  • MadM57
  • MDC002078.274:9227-9488
  • CAAAATTTG
  • CAAAATTTGGGATTTGGATCCTCGCTGGATCCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
    A                         CC    CCTG      C   G A    A   CT    C                 A     C     ---AAATG     A        AAAAGT     AGC
CAAA TTTGGGATTTGGATCCTCGCTGGAT  CCTC    GGGATC TAG G TCAA GCA  TGGA CGTTGATAAAAAATCGT CGGCC TAATT        TTTTT ATATTTTT      AAAGC   
|||| |||||||||||||||||||||||||  ||||    |||||| ||| | |||| |||  |||| ||||||||||||||||| ||||| |||||        ||||| ||||||||      |||||    
GTTT AAACCCTAAACCTAGGAGCGGCCTA  GGAG    CCCTAG ATC C AGTT TGT  ATCT GCAACTATTTTTTAGTA GTCGG GTTAA        AAAAA TATAAAAA      TTTTG   
    A                         TA    AAAY      T   W Y    G   AC    R                 C     T     AAAAAGTA     A        -ATGTR     CTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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