Plant MITE

SE3020873

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1010
Malus domestica
SE3020873
Mutator
MadM4
MDC005523.499:12115-12302
ATTTTTTAA
GAGTAATGCTAGGAAAATTAAATTT

Secondary structure and sequence

TSD TIR

5'

3'

ATTTTTTAA     A         A   A     TRAA         -GC        --------------------------TA  GTGTCACCAATAGAAATRA
         GAGTA TGCTAGGAA ATT AATTT    ATTAAATTT   AAACTAAA                            AT                   
         ||||| ||||||||| ||| |||||    |||||||||   ||||||||                            ||                   G
         CTCAT ACGATCCTT TGA TTAAA    TGATTTAAA   TTTGATTT                            TG                   
AATTTTTTA     K         C   G     CCTC         ATC        CCTATATCTTCAAYTACTAACCAAATAA  AATTYGCAACTATYTGCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020873

ATTTTTTAAGAGTAATGCTAGGAAAATTAAATTTTRAAATTAAATTTGCAAACTAAATAATGTGTCACCAATAGAAATRAGCACGTYTATCAACGYTTAAGTAATAAACCAATCATYAACTTCTATATCCTTTAGTTTCTAAAATTTAGTCTCCAAATTGAGTCTTCCTAGCAKTACTCATTTTTTAA

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