Plant MITE

SE3020874

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1011
Malus domestica
SE3020874
Mutator
MadM12
MDC019984.326:1721-1961
CTTTTCAGT
AGTGGAAAAGGATTCTCGCCGGATTCTTTTCTTAGGGATCCTAAGGATTTCGTGATCGTAACTGTTCATCGTACATCGTGCGATCAGTTTTCGTT

Secondary structure and sequence

TSD TIR

5'

3'

 CTTTTC  T               C       -      TA     C                C  A                      A    TTT     AGGTACTATTTATA     T     A
       AG GGAAAAGGATTCTCG CGGATTC TTTTCT  GGGAT CTAAGGATTTCGTGAT GT ACTGTTCATCGTACATCGTGCG TCAG   TCGTT              TTAAA TTTAA 
       || ||||||||||||||| ||||||| ||||||  ||||| |||||||||||||||| || |||||||||||||||||||||| ||||   |||||              ||||| ||||| T
       TC CCTTTTCCTAGGAGC GTCTAGG AAAAGA  CCCTA GATTCCTAGAGCACTA CA TGGCAAGTAGCATGTAGTACGC AGTC   AGTAA              AGTTT AAATT 
TGACTTT  -               A       G      -C     A                A  C                      C    TTT     --------------     T     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020874

CTTTTCAGTGGAAAAGGATTCTCGCCGGATTCTTTTCTTAGGGATCCTAAGGATTTCGTGATCGTAACTGTTCATCGTACATCGTGCGATCAGTTTTCGTTAGGTACTATTTATATTAAATTTTAAATTTTAAATTTTGAAATGATTTCTGACCGCATGATGTACGATGAACGGTCACAATCACGAGATCCTTAGAATCCCCAGAAAAGGGATCTGACGAGGATCCTTTTCCCTTTTCAGT

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