Plant MITE

SE3020876

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1013
Malus domestica
SE3020876
Mutator
MadM27
MDC002647.225:17039-17252
CATTTGTTT
CATTTGTTTGGAATTGGATCCTCTCTTGAGCTTGGGTTTAGAAGCCTCCTAACCAACACACAAGGCTGTTAGATTTTGATCCAACGGCTACAATTA

Secondary structure and sequence

TSD TIR

5'

3'

     TT  TTT           C           T        A     C  A           -        A                      T  -TTATAA   T
   CA  TG   GGAATTGGATC TCTCTTGAGCT GGGTTTAG AGCCT CT ACCAACACACA AGGCTGTT GATTTTGATCCAACGGCTACAA TA       CTT 
   ||  ||   ||||||||||| ||||||||||| |||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||||||| ||       ||| T
   GT  AC   CCTTAACCTAG AGAGGACTCGA CCCGAGTC TCGGA GA TGGTTGTGTGT TCTGGCAA CTAAAACTAGGTTGCCGATGTT GT       GAA 
TTT  TT  ---           T           -        C     C  C           A        C                      T  TTCTCAG   A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020876

CATTTGTTTGGAATTGGATCCTCTCTTGAGCTTGGGTTTAGAAGCCTCCTAACCAACACACAAGGCTGTTAGATTTTGATCCAACGGCTACAATTATTATAACTTTTAAAGGACTCTTTGTTTGTAGCCGTTGGATCAAAATCCAACGGTCTATGTGTGTTGGTCAGCAGGCTCCTGAGCCCAGCTCAGGAGATGATCCAATTCCCATTTGTTT

Copy Cancel