SE3020880

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1017
  • Malus domestica
  • SE3020880
  • Mutator
  • MadM12
  • MDC006922.137:1391-1620
  • CTCATCAAT
  • GAACCAGGATGCTCTCCTGAGCAGTTCCTTAGGGATCCCGTAATCTTGTCCGTTCATTTTATATCGTGCGGTCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCATCAAT          G                    ----------              T            T             C  ---------TTT  GTTAGGTWCTATTCAT
         GAACCAGGAT CTCTCCTGAGCAGTTCCTTA          GGGATCCCGTAATC TGTCCGTTCATT TATATCGTGCGGT AG            CC                
         |||||||||| ||||||||||||||||||||          |||||||||||||| |||||||||||| ||||||||||||| ||            ||                A
         CTTGGTCCTA GAGAGGACTCGTCAAGGGAT          CCCTAGGGCGTTAG ACAGGCAAGTAG ATATAGCACGCTA TC            TA                
TAACTACTC          G                    TCCTAAGATC              T            C             Y  TTTAAAAAATTT  AATTTAAAWTTAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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