Plant MITE

SE3020882

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1019
Malus domestica
SE3020882
Mutator
MadM7
MDC008407.225:8187-8405
ATTCTATAT
ATGGAACTGGATCCTCTTCAGATCCTCAAAAAATGAGCAGCCTGAGCAATCAATCAGGACTGTTGAAATTTAATCCAACGGCTATAA

Secondary structure and sequence

TSD TIR

5'

3'

  ATTCTAT                   A      C     A    C            CA   -A  A                            TTATTATAACTTTTA    GA
         ATGGAACTGGATCCTCTTC GATCCT AAAAA TGAG AGCCTGAGCAAT  ATC  GG CTGTTGAAATTTAATCCAACGGCTATAA               GAGG  
         ||||||||||||||||||| |||||| ||||| |||| ||||||||||||  |||  || ||||||||||||||||||||||||||||               ||||   
         TACCTTGGTCTAGGAGAGG CTAGGG TTTTT ACTC TCGGATTCGTTA  TAG  CC GGCAATTTTAAATTAGGTTGCCGATGTT               TTCC  
TATATATCT                   C      A     G    A            -C   GA  C                            -------------TG    CC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020882

ATTCTATATGGAACTGGATCCTCTTCAGATCCTCAAAAAATGAGCAGCCTGAGCAATCAATCAGGACTGTTGAAATTTAATCCAACGGCTATAATTATTATAACTTTTAGAGGGACCCCTTGTTTGTAGCCGTTGGATTAAATTTTAACGGCCCAGGATCATTGCTTAGGCTACTCAGTTTTTAGGGATCCGGAGAGGATCTGGTTCCATTCTATATAT

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