SE3020883

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1020
  • Malus domestica
  • SE3020883
  • Mutator
  • MadM44
  • MDC013639.237:2500-2716
  • ATCTTTGAA
  • TCTTTGAAGGATTTGGATCCTCTTCTGAGCAAAGTGTCCAAATTCTGCTGACCAAGCAACATGATCCGTTTGATCAAAATTTAACAGCTATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
A  TTT  A                       A  T   CA    C  C   CC           T C   T             C  C     -TTATTATAA   TT
 TC   GA GGATTTGGATCCTCTTCTGAGCA AG GTC  AATT TG TGA  AAGCAACATGA C GTT GATCAAAATTTAA AG TATAA          CTT  
 ||   || ||||||||||||||||||||||| || |||  |||| || |||  ||||||||||| | ||| ||||||||||||| || |||||          |||   
 AG   CT CCTAAACCTAGGAGAGGACTCGT TC CAG  TTAA AC ACT  TTCGTTGTGCT G CAA CTAGTTTTAGGTT TC ATGTT          GGA  
A  TTT  A                       C  C   AC    A  A   AA           T A   C             T  A     TGGTCTTTCG   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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