SE3020884

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1021
  • Malus domestica
  • SE3020884
  • Mutator
  • MadM10
  • MDC012469.280:1682-1919
  • GTGTGCAAA
  • TGTGCAAAGGACAAGGATTGTCTGCCCTCCTTGTTTCGGTACCCTTCTGTGCCCTCCTGTTTTGTGTGGTCATGGTTAAGCCACTTCAACATTTTATATTGTTTTTTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
 G      AA                             G  A                     T                     T              -------------      T    AT
  TGTGCA  GGACAAGGATTGTCTGCCCTCCTTGTTTC GT CCCTTCTGTGCCCTCCTGTTT GTGTGGTCATGGTTAAGCCAC TCAACATTTTATAT             TGTTTT TTAT  
  ||||||  ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||             |||||| ||||   
  ACGTGT  CCTGTTCCTAACAGACGGGAGGAACAAAG TA GGGAGGGTACGGGAGGACAAA CACACCAGTGCCAATTCGGTG AGTTGTAAAATATA             ACAGAA AATA  
AA      -G                             G  C                     -                     C              ATGATAAGTAAAA      T    GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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