Plant MITE

SE3020886

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1023
Malus domestica
SE3020886
Mutator
MadM27
MDC014188.337:13528-13743
CTAGTGAGC
AGCGGAATTGGATCCTCTCCTRAGCAGGAGATTAGGATCTTCCTAACCCACTAATATGAGCGGTTAGATTTTAATCCAACGACTACAA

Secondary structure and sequence

TSD TIR

5'

3'

 CTAGTG  C           C     TRA C                   A  C  C       A  G          A  C            ACACAGAATCCTCT
       AG GGAATTGGATC TCTCC   G AGGAGATTAGGATCTTCCT AC CA TAATATG GC GTTAGATTTT AT CAACGACTACAA              
       || ||||||||||| |||||   | ||||||||||||||||||| || || ||||||| || |||||||||| || ||||||||||||               
       TC CCTTAACCTAG AGAGG   C TCCTCTAGTCCTAGGAGGA TG GT ATTGTGC TG TAATCTAAAA TA GTTGCTGATGTT              
CGAGTGA  -           K     RCA R                   C  A  A       C  G          C  A            AATAATATTTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020886

CTAGTGAGCGGAATTGGATCCTCTCCTRAGCAGGAGATTAGGATCTTCCTAACCCACTAATATGAGCGGTTAGATTTTAATCCAACGACTACAAACACAGAATCCTCTAAAATTTATAATAATTGTAGTCGTTGAATCAAAATCTAATGGTCCGTGTTAATGAGTCAGGAGGATCCTGATCTCCTRCACRGGAGAKGATCCAATTCCCTAGTGAGC

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