SE3020889

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1026
  • Malus domestica
  • SE3020889
  • Mutator
  • MadM43
  • MDC013289.489:7195-7437
  • AAAATAAAT
  • GGAGGTGGATTGTCTACCCTCTCATTTCCATACTCTTCTCATCCCTTCTTGTTTTGTGTGATCACGGTTAAGCCACGTCAACAATTTATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATAAATA               A                            C         T     A                    CAA        CCTATTA      G      TAT
          GGAGGTGGATTGTCT CCCTCTCATTTCCATACTCTTCTCATCC TTCTTGTTT GTGTG TCACGGTTAAGCCACGTCAA   TTTATATT       ATTTTT TTTTAT   
          ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||   ||||||||       |||||| ||||||   T
          CCTCCACCTAACAGA GGGAGGGTAAAGGTATGAGAAGAGTAGG GAGAACAAA CATAC AGTGCCAATTCGGTGTAGTT   AAATATAA       TAAAAA AAAATA   
 ATAAATAAA               C                            A         -     C                    ATA        ------C      A      TTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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