SE3020894

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1031
  • Malus domestica
  • SE3020894
  • Mutator
  • MadM9
  • MDC015306.213:657-910
  • CTTGTAATT
  • GAATGAGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTGTAATT           ATCTCCAGA            T      GA       C AATCATGTCCGTTCATCGTACATCGTGCGGTCATAAATTATTTTAAATATTTTTATTTAAAATTAAATATGAA
         GAATGAGGATC         TTCTCTTTGTGA GATCTT  GGATCCT A                                                                         
         |||||||||||         |||||||||||| ||||||  ||||||| |                                                                         C
         CTTACTCTTAG         GAGAGAAACACT CTAGAA  CCTAGGA G                                                                         
TTAATGTTC           ---------            C      -G       - AAACACTCCTAGGGGCCCTAGGAATTTAACACAGACAAGTAGCTTGTAGCATACATTCAAAAGCAGTCCATGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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