SE3030895

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1032
  • Malus domestica
  • SE3030895
  • hAT
  • Madh22
  • MDC006604.103:5471-5923
  • GTTTCGAG
  • TCGAGCAAGGTTCTAAAAAACACTAGGCGCTAGTCGGGCGGCGGGT

Secondary structure and sequence

TSD    TIR
5'



3'
GTT     - A  -            --A       -  A   -     GC    TAGA       -------   -   GCGGCTAGGCSGATATAGGTAAATCTCTTATTTATCTTGTAAATAAGTACATATTGATACCTAAAAAAAAAYWAACTTGTATGGATGATAAAATAATGATAAAATGCAAATTAGGTACACTATTTCCATAAGTATTGGATGAACTTGTAGTAAATCC
   TCGAG C AG GTTCTAAAAAAC   CTAGGCG CT GTC GGGCG  GGGT    GCTTAGC       GCC TAG                                                                                                                                                             
   ||||| | || ||||||||||||   ||||||| || ||| |||||  ||||    |||||||       ||| |||                                                                                                                                                              
   AGCTT G TC CAAGATTTTTTG   GATCCGC GG CGG TCCGT  CCCG    TGGATCG       CGC AAA                                                                                                                                                             
  G     T G  A            CGG       C  -   A     GA    ----       TTGACTC   A   ACCCGTTTAGCGCTCCTTTTTAGCCCAACCCGGATCCGCCCGATCCGCCAGGATCCTCCAAAAAATAAATAAATAAATAATAATTAACGCACGAAAAAAGAAAAAACCAAAGTACCACCATATGAATACTTTTACCACATAGATTAAACGTTTACTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End