Plant MITE

SE3020897

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1034
Malus domestica
SE3020897
Mutator
MadM43
MDC021808.163:9599-9827
TAATATGAG
ATATGAGGGACAAGGATTGTCTGCCCTCCCACTTCCCGTGCCCTCCTGTTTTATGTGGTCACGGTTAAGCTACGTCAKKATTTTATATTATTGTTT

Secondary structure and sequence

TSD TIR

5'

3'

 TA    GA                     C      -  ---------               T                    C    KK                 TTATAGAGATAA
   ATAT  GGGACAAGGATTGTCTGCCCT CCACTT CC         CGTGCCCTCCTGTTT ATGTGGTCACGGTTAAGCTA GTCA  ATTTTATATTATTGTTT            
   ||||  ||||||||||||||||||||| |||||| ||         ||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||||             
   TATA  TCCTGTTCCTAACAGACGGGA GGTGAA GG         GCACGGGAGGACAAA TACACCAGTGCCAATTCGAT CAGT  TAAAATATAGTGATAAG            
GAG    -A                     A      A  CACGGGAAG               -                    A    TG                 TAAAAACAGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020897

TAATATGAGGGACAAGGATTGTCTGCCCTCCCACTTCCCGTGCCCTCCTGTTTTATGTGGTCACGGTTAAGCTACGTCAKKATTTTATATTATTGTTTTTATAGAGATAATAAGACAAAAATGAATAGTGATATAAAATGTTGACATAGCTTAACCGTGACCACATAAACAGGAGGGCACGGAAGGGCACGGAAAGTGGAAGGGCAGACAATCCTTGTCCTAATATGAG

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