SE3020899

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1036
  • Malus domestica
  • SE3020899
  • Mutator
  • MadM11
  • MDC012267.319:6766-6926
  • ATATAAAGG
  • TATAAAGGGGTGTGATATCCACACATCCCATTTTACTTCTCACACACCTTTTTAATTTTCGGTCGTTGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
A    A         A                  T            C     --       C GT     G   GGATGAA
 TATA AGGGGTGTG TATCCACACATCCCATTT ACTTCTCACACA CTTTT  TAATTTT G  CGTTG ATC       
 |||| ||||||||| |||||||||||||||||| |||||||||||| |||||  ||||||| |  ||||| |||       T
 ATAT TCCCCACAC ATAGGTGTGTGGGGTAAA TGAAGAGTGTGT GAGAA  ATTAAAG C  GCAAC TAG       
A    A         G                  -            A     CT       A AG     -   AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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