Plant MITE

SE3020906

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1043
Malus domestica
SE3020906
Mutator
MadM5
MDC010284.317:4243-4430
CACTAAGTG
CTAAGTGGAGAGATTTTTCAGTGTGACCGGTACACGA

Secondary structure and sequence

TSD TIR

5'

3'

CA  A G             CAG      C  T      AYTMG          GTTARTATACAAATA      T  GTGTGCTAAA     A
  CT A TGGAGAGATTTTT   TGTGAC GG ACACGA     TACATTACGT               GTGGGA AT          AAGTT 
  || | |||||||||||||   |||||| || ||||||     ||||||||||               |||||| ||          ||||| A
  GA T ATCTCTTTAAAAA   ACATTG CC TGTGTT     ATGTGGTGCA               CATCTT TA          TTCAA 
TG  G G             TTA      C  T      -CACK          RAAAATTATCTTCAC      T  AAATAAAAAA     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020906

CACTAAGTGGAGAGATTTTTCAGTGTGACCGGTACACGAAYTMGTACATTACGTGTTARTATACAAATAGTGGGATATGTGTGCTAAAAAGTTAATAACTTAAAAAATAAAATTTTCTACCACTTCTATTAAAARACGTGGTGTAKCACTTGTGTTCCCGTTACAATTAAAAATTTCTCTAGTGAGGT

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