Plant MITE

SE3020908

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1045
Malus domestica
SE3020908
Mutator
MadM8
MDC022670.166:15830-16019
TATTAATTT
ATTAATTTGAGTAATGCT

Secondary structure and sequence

TSD TIR

5'

3'

 T      TT          ------------------------------   - AG  T  --    --- AAGACTAAATTTGCAAACCAAATGATYTGTCACCAATATAAAA
  ATTAAT  GAGTAATGCT                              TGG T  GC AA  ATTT   G                                           
  ||||||  ||||||||||                              ||| |  || ||  ||||   |                                           T
  TAATTA  CTCATTACGA                              CAT T  AA TT  TTGT   T                                           
TT      -T          TCCTTATAATWTAAATATCTAATTAAAAAA   T --  -  TA    ACC TCAACTACTAAKCTAATAATGAACTCACAACTAATTGTATGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020908

TATTAATTTGAGTAATGCTTGGTAGGCTAAATTTGAAGACTAAATTTGCAAACCAAATGATYTGTCACCAATATAAAATAAGTATGTTAATCAACACTCAAGTAATAATCKAATCATCAACTTCCATGTTATTTAATTTACAAAAAATTAATCTATAAATWTAATATTCCTAGCATTACTCTATTAATTT

Copy Cancel