SE3020909

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1046
  • Malus domestica
  • SE3020909
  • Mutator
  • MadM9
  • MDC019828.180:14882-15110
  • TAATTATTG
  • TAATTATTGAATGAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
        TT         TTCTCTTTGGA          A     CR                 C       C  C           AGRCAATTTTC      ---      TTATATTC      AAAT
  TAATTA  GAATGAGGA           TCCTCTTTGT AGGAT  TGGAGATCCTCCAATCA GTCTGTT AT GTACATCGTGC           GTCAGG   TATTGT        AATTTT    
  ||||||  |||||||||           |||||||||| |||||  ||||||||||||||||| ||||||| || |||||||||||           ||||||   ||||||        ||||||     
  ATTAAT  CTTACTCCT           AGGAGAAACA TCCTA  GCCTTTAGGAGGTTAGT TAGGCAA TA CATGTAGTACG           CAGTTT   ATAACA        TTAAAA    
TT      -T         -----------          C     AG                 A       A  A           ----------C      TTA      --------      AAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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