SE3020912

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1049
  • Malus domestica
  • SE3020912
  • Mutator
  • MadM30
  • MDC023193.56:7714-7876
  • ATGTTATAG
  • GGGTAGTGCTATTCACACACCCCTTTTTACCTCTCACACACC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGTTATA    A       T  C      C                A  -RTTG         -TCCATT    TTCATCA
        GGGT GTGCTAT CA ACACCC TTTTTACCTCTCACAC CC     TAATTTTCG       GATC       
        |||| ||||||| || |||||| |||||||||||||||| ||     |||||||||       ||||       A
        CCCA CACGATA GT TGTGGG AAAAATGGAGAGTGTG GG     GTTAAAGGC       CTAG       
ATATTGTA    C       T  T      T                C  GCAGA         CGACAAT    CTTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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