Plant MITE

SE3020918

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1055
Malus domestica
SE3020918
Mutator
MadM41
MDC011041.434:2097-2313
TTTTTCTTT
GGATTTGGATCCTCTCCTGAGCCAATGGAGAGGGTCCTCCTGACCAAGTATTGTGGACCGTTGGATTTTCATTTAACGGTTATAATTA

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTCTTT          C   T       C          G   T              G                C       G       T  TTATAACTTT     G
         GGATTTGGAT CTC CCTGAGC AATGGAGAGG TCC CCTGACCAAGTATT TGGACCGTTGGATTTT ATTTAAC GTTATAA TA          AAAGG 
         |||||||||| ||| ||||||| |||||||||| ||| |||||||||||||| |||||||||||||||| ||||||| ||||||| ||          ||||| A
         CCTAAACCTA GAG GGACTCG TTACCTCTCC AGG GGATTGGTTTGTAA ACCTGGCAACTTAAAA TAAGTTG CGATGTT GT          TTTCC 
TTTCTTTTT          A   T       A          G   T              A                A       G       T  ----------     C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020918

TTTTTCTTTGGATTTGGATCCTCTCCTGAGCCAATGGAGAGGGTCCTCCTGACCAAGTATTGTGGACCGTTGGATTTTCATTTAACGGTTATAATTATTATAACTTTAAAGGGACCCTTTTGTTTGTAGCGGTTGAATAAAAATTCAACGGTCCAAAATGTTTGGTTAGGTGGAGCCTCTCCATTAGCTCAGGTGAGAATCCAAATCCTTTTTCTTT

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