Plant MITE

SE3020920

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1057
Malus domestica
SE3020920
Mutator
MadM33
MDC010445.261:4063-4378
ATGAACTTT
TGAGTAATGCTATTCACACCATGTTTTTATACCACATTTCTATACCATCTTAGGTGGCATCTGAWGTGGACTCCCACATCATTTGA

Secondary structure and sequence

TSD TIR

5'

3'

ATGAACTT                C  C        A     C    C    C               C   W      TC   C         YYNTTTTG     ---------CCCA    AKTGKATTATAWAGACTCCTCGTANACCACAATCATCAT
        TGAGTAATGCTATTCA AC ATGTTTTT TACCA ATTT TATA CATCTTAGGTGGCAT TGA GTGGAC  CCA ATCATTTGA        CAAAA             AGGA                                       
        |||||||||||||||| || |||||||| ||||| |||| |||| ||||||||||||||| ||| ||||||  ||| |||||||||        |||||             ||||                                       T
        ACTCATTACGATAAGT TG TACAAAAA ATGGT TAAA GTAT GTGGAATCCACCGTA ACT CACCTG  GGT TAGTAAACT        GTTTT             AGTA                                       
TTTCAAGT                A  A        C     A    A    A               A   A      TC   A         --TACTTA     TAAATTTAAATCA    ATAAATTATTTGATCAWTWWTTCTTTTTAATCAATTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020920

ATGAACTTTGAGTAATGCTATTCACACCATGTTTTTATACCACATTTCTATACCATCTTAGGTGGCATCTGAWGTGGACTCCCACATCATTTGAYYNTTTTGCAAAACCCAAGGAAKTGKATTATAWAGACTCCTCGTANACCACAATCATCATTTAATTAACTAATTTTTCTTWWTWACTAGTTTATTAAATAATGAACTAAATTTAAATTTTTGATTCATTCAAATGATATGGCTGTCCACATCAAATGCCACCTAAGGTGATATGAAAATATGGTACAAAAACATAGTATGAATAGCATTACTCATGAACTTT

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