SE3020925

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1062
  • Malus domestica
  • SE3020925
  • Mutator
  • MadM11
  • MDC011116.192:6202-6365
  • ATGCAAAAG
  • TGCAAAAGGGATGTGATATCYACAYACCCCTTTTTACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 A    AA    A    A    Y   Y   C          CTCTC   Y -   -        CGG  GTTG    GGATGAA
  TGCA  AGGG TGTG TATC ACA ACC CTTTTTACTT     ACA C CTT TTAATTTT   CC    GATC       
  ||||  |||| |||| |||| ||| ||| ||||||||||     ||| | ||| ||||||||   ||    ||||       T
  ACGT  TCCC ACAC ATAG TGT TGG GAAAAATGAA     TGT G GAA AATTAAAA   GG    CTAG       
AA    -A    C    G    G   G   R          AARGR   R A   C        AYA  -AAA    AARAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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